Detailed information of SNP:
|
SNP ID:
sf1214116619(Gbrowse)
Chromosome: chr12 Position: 14116619 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 93.85% | 6.15% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 478 | 86.19% | 13.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 324 | 95.06% | 4.94% |
| Tropical Japonica | 88 | 52.27% | 47.73% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214116619 | G->T | INTERGENIC | None |