Detailed information of SNP:
|
SNP ID:
sf1214116734(Gbrowse)
Chromosome: chr12 Position: 14116734 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 95.92% | 4.08% |
| All Indica | 757 | 92.87% | 7.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 85.67% | 14.33% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214116734 | C->A | INTERGENIC | None |