Detailed information of SNP:
|
SNP ID:
sf1214117473(Gbrowse)
Chromosome: chr12 Position: 14117473 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 59.60% | 40.40% |
| All Indica | 792 | 66.41% | 33.59% |
| All Japonica | 496 | 42.14% | 57.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 209 | 70.81% | 29.19% |
| Indica Intermediate | 208 | 73.08% | 26.92% |
| Temperate Japonica | 334 | 23.05% | 76.95% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214117473 | A->G | INTERGENIC | None |