Detailed information of SNP:
|
SNP ID:
sf1214118011(Gbrowse)
Chromosome: chr12 Position: 14118011 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 89.17% | 10.83% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 495 | 75.15% | 24.85% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 82.88% | 17.12% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214118011 | C->T | INTERGENIC | None |