Detailed information of SNP:
|
SNP ID:
sf1214131990(Gbrowse)
Chromosome: chr12 Position: 14131990 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 85.07% | 14.93% |
| All Indica | 758 | 89.31% | 10.69% |
| All Japonica | 476 | 77.10% | 22.90% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 188 | 78.19% | 21.81% |
| Indica Intermediate | 198 | 84.85% | 15.15% |
| Temperate Japonica | 321 | 85.98% | 14.02% |
| Tropical Japonica | 89 | 43.82% | 56.18% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214131990 | C->T | LOC_Os12g24680(LOC_Os12g24680.1) | INTRON |