Detailed information of SNP:
|
SNP ID:
sf1214131997(Gbrowse)
Chromosome: chr12 Position: 14131997 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 96.61% | 3.39% |
| All Indica | 725 | 96.69% | 3.31% |
| All Japonica | 478 | 99.79% | 0.21% |
| Aus | 52 | 67.31% | 32.69% |
| Indica I | 322 | 93.79% | 6.21% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 194 | 99.48% | 0.52% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 100.00% | 0.00% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214131997 | G->A | LOC_Os12g24680(LOC_Os12g24680.1) | INTRON |