Detailed information of SNP:
|
SNP ID:
sf1214132009(Gbrowse)
Chromosome: chr12 Position: 14132009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 84.04% | 15.96% |
| All Indica | 758 | 89.05% | 10.95% |
| All Japonica | 487 | 75.36% | 24.64% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 188 | 78.19% | 21.81% |
| Indica Intermediate | 198 | 84.34% | 15.66% |
| Temperate Japonica | 326 | 84.66% | 15.34% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214132009 | G->A | LOC_Os12g24680(LOC_Os12g24680.1) | INTRON |