Detailed information of SNP:
|
SNP ID:
sf1214138050(Gbrowse)
Chromosome: chr12 Position: 14138050 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.03% | 9.97% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 493 | 77.48% | 22.52% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 85.93% | 14.07% |
| Tropical Japonica | 91 | 45.05% | 54.95% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214138050 | C->T | INTERGENIC | None |