Detailed information of SNP:
SNP ID:
sf1214138054(Gbrowse)
Chromosome: chr12 Position: 14138054 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1399 | 89.28% | 10.72% |
All Indica | 784 | 96.68% | 3.32% |
All Japonica | 493 | 77.48% | 22.52% |
Aus | 67 | 86.57% | 13.43% |
Indica I | 366 | 98.63% | 1.37% |
Indica II | 210 | 92.86% | 7.14% |
Indica Intermediate | 208 | 97.12% | 2.88% |
Temperate Japonica | 335 | 85.67% | 14.33% |
Tropical Japonica | 91 | 46.15% | 53.85% |
Japonica Intermediate | 67 | 79.10% | 20.90% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1214138054 | C->T | INTERGENIC | None |