Detailed information of SNP:



SNP ID: sf1214138054(Gbrowse)

Chromosome: chr12

Position: 14138054
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1399 89.28% 10.72%
All Indica784 96.68% 3.32%
All Japonica493 77.48% 22.52%
Aus67 86.57% 13.43%
Indica I366 98.63% 1.37%
Indica II210 92.86% 7.14%
Indica Intermediate208 97.12% 2.88%
Temperate Japonica335 85.67% 14.33%
Tropical Japonica91 46.15% 53.85%
Japonica Intermediate67 79.10% 20.90%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 92.68% 7.32%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1214138054 C->T INTERGENIC None