Detailed information of SNP:
|
SNP ID:
sf1214138054(Gbrowse)
Chromosome: chr12 Position: 14138054 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 89.28% | 10.72% |
| All Indica | 784 | 96.68% | 3.32% |
| All Japonica | 493 | 77.48% | 22.52% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 366 | 98.63% | 1.37% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214138054 | C->T | INTERGENIC | None |