Detailed information of SNP:
|
SNP ID:
sf1214138056(Gbrowse)
Chromosome: chr12 Position: 14138056 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 86.43% | 13.57% |
| All Indica | 772 | 91.97% | 8.03% |
| All Japonica | 490 | 76.94% | 23.06% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 194 | 78.35% | 21.65% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 332 | 84.94% | 15.06% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214138056 | C->T | INTERGENIC | None |