Detailed information of SNP:
|
SNP ID:
sf1214142693(Gbrowse)
Chromosome: chr12 Position: 14142693 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.74% | 25.26% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 496 | 35.69% | 64.31% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 30.24% | 69.76% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214142693 | A->G | INTERGENIC | None |