Detailed information of SNP:
|
SNP ID:
sf1214145167(Gbrowse)
Chromosome: chr12 Position: 14145167 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 71.10% | 28.90% |
| All Indica | 790 | 89.24% | 10.76% |
| All Japonica | 493 | 40.77% | 59.23% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 333 | 22.82% | 77.18% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214145167 | C->T | INTERGENIC | None |