Detailed information of SNP:
|
SNP ID:
sf1214145253(Gbrowse)
Chromosome: chr12 Position: 14145253 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 93.39% | 6.61% |
| All Indica | 792 | 96.46% | 3.54% |
| All Japonica | 493 | 87.22% | 12.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 91 | 74.73% | 25.27% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214145253 | G->A | INTERGENIC | None |