Detailed information of SNP:
|
SNP ID:
sf1214175914(Gbrowse)
Chromosome: chr12 Position: 14175914 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.90% | 31.10% |
| All Indica | 798 | 82.33% | 17.67% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214175914 | T->C | INTERGENIC | None |