Detailed information of SNP:
|
SNP ID:
sf1214190120(Gbrowse)
Chromosome: chr12 Position: 14190120 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.60% | 10.40% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 493 | 76.27% | 23.73% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 90 | 47.78% | 52.22% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214190120 | A->T | INTERGENIC | None |