Detailed information of SNP:
|
SNP ID:
sf1214195616(Gbrowse)
Chromosome: chr12 Position: 14195616 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.65% | 25.35% |
| All Indica | 797 | 91.59% | 8.41% |
| All Japonica | 496 | 42.74% | 57.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 23.95% | 76.05% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214195616 | A->G | INTERGENIC | None |