Detailed information of SNP:
|
SNP ID:
sf1214196543(Gbrowse)
Chromosome: chr12 Position: 14196543 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 93.42% | 6.58% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 477 | 84.49% | 15.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 318 | 82.39% | 17.61% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214196543 | G->A | INTERGENIC | None |