Detailed information of SNP:
|
SNP ID:
sf1214201510(Gbrowse)
Chromosome: chr12 Position: 14201510 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.12% | 31.88% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214201510 | G->A | LOC_Os12g24760(LOC_Os12g24760.1) | Non-Synonymous SNP |