Detailed information of SNP:
|
SNP ID:
sf1214214523(Gbrowse)
Chromosome: chr12 Position: 14214523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.00% | 41.00% |
| All Indica | 797 | 65.24% | 34.76% |
| All Japonica | 497 | 59.15% | 40.85% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 52.41% | 47.59% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214214523 | G->A | LOC_Os12g24790(LOC_Os12g24790.1) | Synonymous |