Detailed information of SNP:
|
SNP ID:
sf1214240924(Gbrowse)
Chromosome: chr12 Position: 14240924 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 96.94% | 3.06% |
| All Indica | 790 | 99.37% | 0.63% |
| All Japonica | 491 | 92.87% | 7.13% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 367 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214240924 | C->T | INTERGENIC | None |