Detailed information of SNP:
|
SNP ID:
sf1214269239(Gbrowse)
Chromosome: chr12 Position: 14269239 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 75.02% | 24.98% |
| All Indica | 791 | 93.55% | 6.45% |
| All Japonica | 496 | 40.52% | 59.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 20.96% | 79.04% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214269239 | C->A | INTERGENIC | None |