Detailed information of SNP:
|
SNP ID:
sf1214271282(Gbrowse)
Chromosome: chr12 Position: 14271282 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 81.72% | 18.28% |
| All Indica | 777 | 70.40% | 29.60% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 362 | 69.89% | 30.11% |
| Indica II | 207 | 75.85% | 24.15% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214271282 | C->T | INTERGENIC | None |