Detailed information of SNP:
|
SNP ID:
sf1214291168(Gbrowse)
Chromosome: chr12 Position: 14291168 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 79.86% | 20.14% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 475 | 47.16% | 52.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 314 | 28.66% | 71.34% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214291168 | T->G | INTERGENIC | None |