Detailed information of SNP:
|
SNP ID:
sf1214299584(Gbrowse)
Chromosome: chr12 Position: 14299584 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 95.49% | 4.51% |
| All Indica | 735 | 92.11% | 7.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 327 | 88.99% | 11.01% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 195 | 89.23% | 10.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214299584 | T->G | INTERGENIC | None |