Detailed information of SNP:
|
SNP ID:
sf1214311884(Gbrowse)
Chromosome: chr12 Position: 14311884 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 70.66% | 29.34% |
| All Indica | 787 | 78.53% | 21.47% |
| All Japonica | 497 | 60.56% | 39.44% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 369 | 82.66% | 17.34% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 207 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214311884 | A->G | INTERGENIC | None |