Detailed information of SNP:
|
SNP ID:
sf1214318417(Gbrowse)
Chromosome: chr12 Position: 14318417 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1226 | 64.85% | 35.15% |
| All Indica | 720 | 52.78% | 47.22% |
| All Japonica | 392 | 93.37% | 6.63% |
| Aus | 63 | 30.16% | 69.84% |
| Indica I | 339 | 56.05% | 43.95% |
| Indica II | 192 | 50.00% | 50.00% |
| Indica Intermediate | 189 | 49.74% | 50.26% |
| Temperate Japonica | 301 | 97.34% | 2.66% |
| Tropical Japonica | 49 | 71.43% | 28.57% |
| Japonica Intermediate | 42 | 90.48% | 9.52% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214318417 | C->T | INTERGENIC | None |