Detailed information of SNP:
|
SNP ID:
sf1214323174(Gbrowse)
Chromosome: chr12 Position: 14323174 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 90.05% | 9.95% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214323174 | C->G | LOC_Os12g24950(LOC_Os12g24950.1) | INTRON |