Detailed information of SNP:
|
SNP ID:
sf1214328488(Gbrowse)
Chromosome: chr12 Position: 14328488 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 92.20% | 7.80% |
| All Indica | 794 | 98.61% | 1.39% |
| All Japonica | 484 | 81.40% | 18.60% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 326 | 88.04% | 11.96% |
| Tropical Japonica | 91 | 57.14% | 42.86% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214328488 | C->T | INTERGENIC | None |