Detailed information of SNP:
|
SNP ID:
sf1214329125(Gbrowse)
Chromosome: chr12 Position: 14329125 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 94.07% | 5.93% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 463 | 86.83% | 13.17% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 317 | 91.17% | 8.83% |
| Tropical Japonica | 83 | 68.67% | 31.33% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214329125 | C->T | INTERGENIC | None |