Detailed information of SNP:
|
SNP ID:
sf1214332331(Gbrowse)
Chromosome: chr12 Position: 14332331 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.19% | 11.81% |
| All Indica | 795 | 91.57% | 8.43% |
| All Japonica | 496 | 82.06% | 17.94% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214332331 | G->T | LOC_Os12g24970(LOC_Os12g24970.1) | INTRON |