Detailed information of SNP:
|
SNP ID:
sf1214344114(Gbrowse)
Chromosome: chr12 Position: 14344114 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 72.89% | 27.11% |
| All Indica | 791 | 82.05% | 17.95% |
| All Japonica | 496 | 60.28% | 39.72% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 334 | 79.94% | 20.06% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214344114 | G->T | LOC_Os12g24990(LOC_Os12g24990.1) | Synonymous |