Detailed information of SNP:
|
SNP ID:
sf1214344812(Gbrowse)
Chromosome: chr12 Position: 14344812 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 73.53% | 26.47% |
| All Indica | 797 | 83.06% | 16.94% |
| All Japonica | 497 | 60.56% | 39.44% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214344812 | G->C | INTERGENIC | None |