Detailed information of SNP:
|
SNP ID:
sf1214352249(Gbrowse)
Chromosome: chr12 Position: 14352249 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 64.76% | 35.24% |
| All Indica | 781 | 77.08% | 22.92% |
| All Japonica | 496 | 40.32% | 59.68% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 368 | 77.17% | 22.83% |
| Indica II | 209 | 77.99% | 22.01% |
| Indica Intermediate | 204 | 75.98% | 24.02% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214352249 | T->C | LOC_Os12g25000(LOC_Os12g25000.1) | Non-Synonymous SNP |