Detailed information of SNP:
|
SNP ID:
sf1214353371(Gbrowse)
Chromosome: chr12 Position: 14353371 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 86.39% | 13.61% |
| All Indica | 791 | 88.24% | 11.76% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214353371 | A->G | LOC_Os12g25000(LOC_Os12g25000.1) | Non-Synonymous SNP |