Detailed information of SNP:
|
SNP ID:
sf1214355653(Gbrowse)
Chromosome: chr12 Position: 14355653 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 98.15% | 1.85% |
| All Indica | 788 | 97.21% | 2.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214355653 | G->A | INTERGENIC | None |