Detailed information of SNP:
|
SNP ID:
sf1214359734(Gbrowse)
Chromosome: chr12 Position: 14359734 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.47% | 10.53% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214359734 | C->A | INTERGENIC | None |