Detailed information of SNP:
|
SNP ID:
sf1214362619(Gbrowse)
Chromosome: chr12 Position: 14362619 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 68.98% | 31.02% |
| All Indica | 756 | 85.32% | 14.68% |
| All Japonica | 495 | 41.01% | 58.99% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 347 | 85.01% | 14.99% |
| Indica II | 205 | 84.39% | 15.61% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 334 | 21.86% | 78.14% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214362619 | T->C | INTERGENIC | None |