Detailed information of SNP:
|
SNP ID:
sf1214362718(Gbrowse)
Chromosome: chr12 Position: 14362718 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 80.09% | 19.91% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 493 | 63.29% | 36.71% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 332 | 82.53% | 17.47% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214362718 | G->A | INTERGENIC | None |