Detailed information of SNP:
|
SNP ID:
sf1214362786(Gbrowse)
Chromosome: chr12 Position: 14362786 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 81.35% | 18.65% |
| All Indica | 796 | 90.70% | 9.30% |
| All Japonica | 492 | 65.85% | 34.15% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 91 | 15.38% | 84.62% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214362786 | G->A | INTERGENIC | None |