Detailed information of SNP:
|
SNP ID:
sf1214372391(Gbrowse)
Chromosome: chr12 Position: 14372391 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 85.58% | 14.42% |
| All Indica | 791 | 94.06% | 5.94% |
| All Japonica | 487 | 71.66% | 28.34% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 330 | 83.64% | 16.36% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 64 | 46.88% | 53.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214372391 | T->C | INTERGENIC | None |