Detailed information of SNP:
|
SNP ID:
sf1214373781(Gbrowse)
Chromosome: chr12 Position: 14373781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 97.90% | 2.10% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 465 | 95.27% | 4.73% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 314 | 97.13% | 2.87% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214373781 | C->T | INTERGENIC | None |