Detailed information of SNP:
|
SNP ID:
sf1214378056(Gbrowse)
Chromosome: chr12 Position: 14378056 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 82.13% | 17.87% |
| All Indica | 775 | 75.10% | 24.90% |
| All Japonica | 469 | 95.10% | 4.90% |
| Aus | 62 | 70.97% | 29.03% |
| Indica I | 364 | 90.66% | 9.34% |
| Indica II | 212 | 48.58% | 51.42% |
| Indica Intermediate | 199 | 74.87% | 25.13% |
| Temperate Japonica | 331 | 97.28% | 2.72% |
| Tropical Japonica | 79 | 88.61% | 11.39% |
| Japonica Intermediate | 59 | 91.53% | 8.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214378056 | A->G | LOC_Os12g25050(LOC_Os12g25050.1) | INTRON |