Detailed information of SNP:
|
SNP ID:
sf1214381583(Gbrowse)
Chromosome: chr12 Position: 14381583 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 92.16% | 7.84% |
| All Indica | 775 | 87.61% | 12.39% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 357 | 84.87% | 15.13% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214381583 | T->C | LOC_Os12g25050(LOC_Os12g25050.1) | Non-Synonymous SNP |