Detailed information of SNP:
|
SNP ID:
sf1214387366(Gbrowse)
Chromosome: chr12 Position: 14387366 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 77.86% | 22.14% |
| All Indica | 791 | 88.50% | 11.50% |
| All Japonica | 496 | 61.29% | 38.71% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 371 | 90.03% | 9.97% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214387366 | T->C | INTERGENIC | None |