Detailed information of SNP:
|
SNP ID:
sf1214397290(Gbrowse)
Chromosome: chr12 Position: 14397290 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 65.58% | 34.42% |
| All Indica | 793 | 77.55% | 22.45% |
| All Japonica | 497 | 39.44% | 60.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 89.73% | 10.27% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 20.00% | 80.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214397290 | T->G | INTERGENIC | None |