Detailed information of SNP:
|
SNP ID:
sf1214400411(Gbrowse)
Chromosome: chr12 Position: 14400411 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1293 | 93.89% | 6.11% |
| All Indica | 699 | 89.27% | 10.73% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 57 | 96.49% | 3.51% |
| Indica I | 327 | 88.99% | 11.01% |
| Indica II | 193 | 87.05% | 12.95% |
| Indica Intermediate | 179 | 92.18% | 7.82% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214400411 | G->C | LOC_Os12g25070(LOC_Os12g25070.1) | Non-Synonymous SNP |