Detailed information of SNP:
|
SNP ID:
sf1214412692(Gbrowse)
Chromosome: chr12 Position: 14412692 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 74.17% | 25.83% |
| All Indica | 793 | 91.80% | 8.20% |
| All Japonica | 497 | 40.85% | 59.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 21.79% | 78.21% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214412692 | T->C | LOC_Os12g25100(LOC_Os12g25100.1) | INTRON |
| sf1214412692 | T->C | LOC_Os12g25100(LOC_Os12g25100.1) | SNPs that disrupt splice sites |