Detailed information of SNP:



SNP ID: sf1214414427(Gbrowse)

Chromosome: chr12

Position: 14414427
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1402 63.91% 36.09%
All Indica783 74.46% 25.54%
All Japonica496 40.32% 59.68%
Aus67 100.00% 0.00%
Indica I365 64.66% 35.34%
Indica II213 84.51% 15.49%
Indica Intermediate205 81.46% 18.54%
Temperate Japonica335 21.49% 78.51%
Tropical Japonica94 89.36% 10.64%
Japonica Intermediate67 65.67% 34.33%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1214414427 T->C LOC_Os12g25100(LOC_Os12g25100.1) Synonymous