Detailed information of SNP:
|
SNP ID:
sf1214414427(Gbrowse)
Chromosome: chr12 Position: 14414427 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 63.91% | 36.09% |
| All Indica | 783 | 74.46% | 25.54% |
| All Japonica | 496 | 40.32% | 59.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 64.66% | 35.34% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 205 | 81.46% | 18.54% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214414427 | T->C | LOC_Os12g25100(LOC_Os12g25100.1) | Synonymous |