Detailed information of SNP:
|
SNP ID:
sf1214463065(Gbrowse)
Chromosome: chr12 Position: 14463065 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.71% | 35.29% |
| All Indica | 798 | 75.94% | 24.06% |
| All Japonica | 497 | 40.04% | 59.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214463065 | G->A | INTERGENIC | None |