Detailed information of SNP:
|
SNP ID:
sf1214481491(Gbrowse)
Chromosome: chr12 Position: 14481491 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 79.26% | 20.74% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 491 | 43.99% | 56.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 330 | 26.06% | 73.94% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214481491 | A->G | INTERGENIC | None |